Cytoscape Desktop MCP
Drive a running Cytoscape Desktop to load, lay out, and style biological networks.
Install
MCPB bundlesstdio
https://github.com/cytoscape/cytoscape-desktop-mcp/releases/download/mcpb-v1.0.3/cytoscape-mcp.mcpb npmstdio
npx -y @cytoscape/cytoscape-desktop-mcp-bridge Client config (Claude Desktop, Cursor, Windsurf and most MCP clients)
{
"mcpServers": {
"io-github-cytoscape-cytoscape-desktop-mcp-bridge": {
"command": "https://github.com/cytoscape/cytoscape-desktop-mcp/releases/download/mcpb-v1.0.3/cytoscape-mcp.mcpb",
"args": []
}
}
}Source: official MCP Registry record · registry name io.github.cytoscape/cytoscape-desktop-mcp-bridge · published 2026-08-11 · updated 2026-08-11. Not an endorsement; review the code before connecting it to anything sensitive.